Multicellular Neurobiocomputing

Grant-in-Aid for Transformative Research Areas (B)

Publications

Papers & Preprints

  1. Integrating predictive coding with reservoir computing in spiking neural network model of cultured neurons
    Yoshitaka Ishikawa, Takumi Shinkawa, Takuma Sumi, Hideyuki Kato, Hideaki Yamamoto, Yuichi Katori, NOLTA, IEICE (accepted)
  2. Numerical study on physical reservoir computing with Josephson junctions
    Koki Watanabe, Yoshinao Mizugaki, Satoshi Moriya, Hideaki Yamamoto, Taro Yamashita, Shigeo Sato, IEEE Transactions on Applied Superconductivity 34, 1700204 (2024)

    DOI: 10.1109/TASC.2024.3350576

  3. Location analysis of presynaptically active and silent synapses in single-cultured hippocampal neurons
    Otoya Kitaoka, Kohei Oyabu, Kaori Kubota,Takuya Watanabe, Satoru Kondo, Teppei Matsui, Shutaro Katsurabayashi, Katsunori Iwasaki, bioRxiv 2023.12.12.571354 (2023)

    DOI:10.1101/2023.12.12.571354

  4. Enhanced responses to inflammatory cytokine interleukin-6 in micropatterned networks of cultured cortical neurons
    Mamoru Sakaibara, Hideaki Yamamoto, Hakuba Murota, Nobuaki Monma, Shigeo Sato, Ayumi Hirano-Iwata, Biochemical and Biophysical Research Communications 695 149379 (2024)

    DOI: 10.1016/j.bbrc.2023.149379

  5. Computation harvesting from nature dynamics for predicting wind speed and direction
    Takumi Aita, Hiroyasu Ando, Yuichi Katori, PLoS ONE 18 e0295649 (2023)

    DOI: 10.1371/journal.pone.0295649

  6. Brain-inspired reservoir computing models
    Yuichi Katori In: H. Suzuki, J. Tanida, M. Hashimoto (eds) Photonic Neural Networks with Spatiotemporal Dynamics. Springer, Singapore, pp. 259-278 (2023)

    DOI: 10.1007/978-981-99-5072-0_13

  7. Evaluation of the hierarchical correspondence between the human brain and artificial neural networks: A review
    Trung Quang Pham, Teppei Matsui, Junichi Chikazoe, Biology 12, 1330 (2023)

    DOI: 10.3390/biology12101330

  8. Model-free idealization: Adaptive integrated approach for idealization of ion channel currents (AI2)
    Madoka Sato, Masanori Hariyama, Maki Komiya, Kae Suzuki, Yuzuru Tozawa, Hideaki Yamamoto, Ayumi Hirano-Iwata, Biophysical Journal 122 3959-3975 (2023)

    DOI: 10.1016/j.bpj.2023.08.019

  9. Modular architecture facilitates noise-driven control of synchrony in neuronal networks
    Hideaki Yamamoto, F. Paul Spitzner, Taiki Takemuro, Victor Buendía, Carla Morante, Tomohiro Konno, Shigeo Sato, Ayumi Hirano-Iwata, Viola Priesemann, Miguel A. Muñoz, Johannes Zierenberg, Jordi Soriano, Science Advances 9, eade1755 (2023)

    DOI: 10.1126/sciadv.ade1755

    Open dataset: G-Node GIN

  10. Ketamine-induced 1-Hz oscillation of spontaneous neural activity is not directly visible in the hemodynamics
    Ruixiang Li, Kenichi Ohki, Teppei Matsui, Biochemical and Biophysical Research Communications 678, 102-108 (2023)

    DOI: 10.1016/j.bbrc.2023.08.034

  11. Microfluidics technologies for reconstituting neuronal network functions in vitro
    Hideaki Yamamoto, Ayumi Hirano-Iwata, Shigeo Sato, JSAP Review 2023, 230420 (2023)

    DOI:10.11470/jsaprev.230420

  12. Biological neurons act as generalization filters in reservoir computing
    Takuma Sumi, Hideaki Yamamoto, Yuichi Katori, Koki Ito, Satoshi Moriya, Tomohiro Konno, Shigeo Sato, Ayumi Hirano-Iwata, Proc. Natl. Acad. Sci., U.S.A. 120, e2217008120 (2023)

    DOI:10.1073/pnas.2217008120

    Open dataset: Zenodo

    Press release: Artificially Cultured Brains Improve Processing of Time Series Data

  13. Simulation test for impartment of use-dependent plasticity by inactivation of axonal potassium channels on hippocampal mossy fibers
    Fumeng Zheng, Haruyuki Kamiya, Front. Cell. Neurosci. 17, 1154910 (2023)

    DOI:10.3389/fncel.2023.1154910

    Open-source code: ModelDB

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